MRIQC: individual T1w report

Summary

  • BIDS filename: sub-3054_ses-2_T1w.
  • Date and time: 2022-10-31, 17:58.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.5997181617808314
cnr2.133854493717293
efc0.649598416925535
fber1145.689758746636
fwhmavg4.208606666666666
fwhmx4.13294
fwhmy4.67517
fwhmz3.81771
icvscsf0.20270409951033547
icvsgm0.40915973368464087
icvswm0.38813616680502366
inumed1.418833613395691
inurange0.6092401266098022
qi15.449669769475076e-06
qi20.003727994027393483
rpvecsf23.995916305220547
rpvegm12.273284320347377
rpvewm15.329300084933996
sizex176
sizey256
sizez256
snrcsf2.588027680018791
snrgm8.496721303938088
snrtotal10.738671158850972
snrwm21.131264492596035
snrdcsf21.121996484687493
snrdgm46.54682645827968
snrdtotal42.487028493780386
snrdwm59.79226253837399
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk9.367554673051083
summarybgmad10.957887947974257
summarybgmean18.455342868383052
summarybgmedian15.151515364646912
summarybgn2337629.0
summarybgp053.787878841161728
summarybgp9540.46563249826431
summarybgstdv12.001586425719376
summarycsfk46.917791315681335
summarycsfmad86.56731478899663
summarycsfmean381.7639977691616
summarycsfmedian353.28899240493774
summarycsfn40866.0
summarycsfp05249.09922745078802
summarycsfp95588.5070297122002
summarycsfstdv136.50729958432694
summarygmk0.30982504767360597
summarygmmad88.6219187792418
summarygmmean789.1591587229412
summarygmmedian778.5476827919483
summarygmn17675.0
summarygmp05657.1507852971554
summarygmp95958.1762884229422
summarygmstdv91.62659697216165
summarywmk0.5760331488409705
summarywmmad44.24247258994606
summarywmmean1001.3822215396849
summarywmmedian1000.092401355505
summarywmn243597.0
summarywmp05925.9977957308292
summarywmp951081.1160536408424
summarywmstdv47.327520269490506
tpmoverlapcsf0.1722058355808258
tpmoverlapgm0.45974478125572205
tpmoverlapwm0.510206937789917
wm2max0.5052784089867807
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime13:08:32.510000
BaseResolution256
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
Dcm2bidsVersion2.1.7
DeviceSerialNumber67034
DwellTime3e-06
EchoTime0.00169
FlipAngle7
ImageOrientationPatientDICOM[0.0554597, 0.99686, -0.0565173, -0.00951578, -0.0560742, -0.998381]
ImageOrientationTextSag>Cor(3.2)>Tra(0.4)
ImageType['ORIGINAL', 'PRIMARY', 'OTHER', 'ND', 'NORM', 'MEAN']
ImagingFrequency123.258
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressFairbanks 710,Chicago ,Chicago,US,60611
InstitutionNameNU Tuna
InstitutionalDepartmentNameDepartment
InversionTime1.16
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
MatrixCoilModeGRAPPA
ModalityMR
NonlinearGradientCorrectionTrue
NumberOfAverages3
ParallelReductionFactorInPlane2
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingSteps191
PhaseResolution1
PixelBandwidth650
ProcedureStepDescriptionfMRI_STUDIES^MITTAL
ProtocolNametfl_epinav_ME3_1mm_p2
PulseSequenceDetails%CustomerSeq%\tfl_mgh_epinav_ABCD
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE256
RefLinesPE36
RepetitionTime2.17
SAR0.0363309
ScanOptionsIR\PFP\WE
ScanningSequenceGR\IR
SequenceNametfl3d3_16ns
SequenceVariantSK\SP\MP
SeriesDescriptiontfl_epinav_ME3_1mm_p2 RMS
SeriesNumber8
ShimSetting[2633, 5508, -7465, 209, -71, -997, 198, -250]
SliceThickness1
SoftwareVersionssyngo MR E11
SpoilingStateTrue
StationNameMRC35427
TxRefAmp267.989
WipMemBlockPrisma_epi_moco_navigator_ABCD_tfl.prot
md5sum586ff4f5fd85fe763b527c75c5075800
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.